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Sunday, November 29, 2009

Content management databases

Content Management databases:  There are good content management database in market and  used wide across several companies like yahoo, Facebook, Amazon.

Thrudb is a set of simple services built on top of the Facebook Apache Thrift framework that provides indexing and document storage services for building and scaling websites. Its purpose is to offer web developers flexible, fast and easy-to-use services that can enhance or replace traditional data storage and access layers.

Thrudb - High Level Features

Thrudb - Services


StrokeDB
Minimalistic modular database engine.
 
StrokeDB stores a set of versioned documents identified by UUID.
A document is a hash-like container of slots: flat set of values tagged with string keys.
Slots store arbitrary serializable values (most common types are booleans, 
numbers, strings, arrays, numbers, time).
 
The concept.

1. Every repository is identified by UUID.
2. Every repository writes a log of commits.
3. Commit tuples:
   (timestamp, "store", uuid, version)
   (timestamp, "pull",  repo_uuid, repo_timestamp)
4. When you pull from a repository:
   1. Find out the latest timestamp in your history (index: repo_uuid -> repo_timestamp)
   2. If there is not timestamp yet, pull the whole log.
   3. If there is a timestamp for a repository UUID, pull the tail of the log.
   4. For each "store" record: fetch the version.
   5. For each "pull" record - add to a deferred list of repositories waiting for update.
   6. When whole log is fetched, fetch deferred repositories. We have two options here:
     1. Fetch from the same repository we've been fetching from few moments ago (say, fetch B log from A)
     2. Or, fetch directly from the desired repository (B log from B repository)

 MongoDB

MongoDB is an open source document-oriented database written in the C++ programming language.

MongoDB is designed for problems without heavy transactional requirements that aren't easily solved by traditional RDBMSs, including problems which require the database to span many servers.

CouchDB

  • A document database server, accessible via a RESTful JSON API.
  • Ad-hoc and schema-free with a flat address space.
  • Distributed, featuring robust, incremental replication with bi-directional conflict detection and management.
  • Query-able and index-able, featuring a table oriented reporting engine that uses Javascript as a query language.

Sunday, November 8, 2009

Oracle flash drive recommendations

Oracle flash drive recommendations


EFD-friendly
DB workloads


Not as
cost-effective on EFD


Random
reads

B-Tree
leaf access


ROWID
look up into Table

Access
to out-of-line LOB

Access
to overflowed row

Index
scan over Unclustered Table

Compression:
Increases I/O intensity (IOPS/GB)



Serial
reads Random writes

Row
update by PK

Index
maintenance

Reduce
checkpoint interval


TEMP:
Sort areas and Intermediate tables


Sequentially
read and written but I/O done in 1 MB units: not enough to amortize
seeks

Lower
Latency: Get In, Get Out



Redo log
files


Sequentially
read and written and commit latency already handled by cache in
storage controller


Undo
table space

Sequentially
written, randomly read by flashBack. But reads are
for recently written data that is likely to still be in the buffer cache



Large
table scans Buffer pools with lots of writes

Mismatch
between read and write latency characteristics of EFDs can cause unwanted
“Free Buffer Waits”. Buffer pool tuning is necessary after deploying EFDs



Reference from Oracle Openworld 2008 presentation



Redo Logs on EFDs? (or not)

It is a common misconception that Oracle online redo logs will benefit by moving them on EFDs, whereas all the experimental data indicates the opposite position. Testing has shown that moving redo logs on to EFDs results in a low percentage of improvement. It is better to leave them on the write cache backed Fibre Channel drives rather than moving them on to EFDs, thereby using EFDs for other read intensive parts of the database like indexes or data.

Oracle TEMP tablespace on EFDs

Oracle uses this space mainly for data aggregations and sorting. When the database engine cannot fit the sorts in memory, they will be spilled on to disk for storing intermediary results. Oracle typically does large sequential I/Os against these tablespaces in the context of single user. When multiple users are performing concurrent sorts on these tablespaces, the I/O turns out to be largely random in nature.  Even though EFDs do not provide as much benefit for large random I/O as they provide to small random operations, still they are far ahead of what regular rotation Fibre Channel drives can deliver. Depending on the availability of space on EFDs, Oracle applications will be benefited by moving the temporary tablespaces to them. Temporary tablespace files should only be moved to EFDs after all the I/O intensive parts have been moved to them.

Database workloads that are the best fit for EFDs

There are no simple, definitive rules that would readily identify applications that best suit the EFDs, but we can follow some guidelines. It is very important to understand the load profile of an application before putting it on the EFDs, taking into consideration the fact that most databases have different workload profiles during different times of the day. The EFDs are suitable for highly read intensive and extremely latency sensitive applications and using these drives against the wrong target may not yield the desired benefit for the investment. It is important to understand the following terminology to help with deciding whether the EFDs are suitable for certain workloads.

Write cache: Most of the storage systems have big write side cache and all write IOPS from a host are generally written to cache and incur no delay due to physical disk access. Storage arrays have write caches sized to match the disk count supported by the controller and support enabling and disabling write cache at the LUN level, if needed.

Read hit: A read request from a database host can be served by storage system immediately if it already exists in storage cache because of a recent read or write or due to prefetch. A read serviced from the storage cache without causing disk access is called a read hit. If the requested data is not available in storage cache, the array must retrieve it from disk; this is referred to as a read miss.

Short-stroked drives: Some extremely latency sensitive applications use this technique on regular Fibre Channel drives to obtain low latencies. This is a technique where data is laid out on many partially populated disks in order to reduce the spindle head movement to provide high IOPS at a very low latency.

Workloads with high cache read-hit rates are already serviced at memory access speed, and deploying them on flash drive technology may not show a significant benefit. Workloads with low cache read-hit rates that exhibit random I/O patterns, with small I/O requests of up to 16 KB, and that require high transaction throughput will benefit most from the low latency of EFDs.

Database and application managers can easily point to mission-critical applications that directly improve business revenue and productivity when business transaction throughput is increased, along with reduced service latencies. Cognizant of these applications, storage administrators would often resort to “short stroking” more drives to ensure the highest possible I/O service level supported for them. EFDs can provide two very important benefits for such applications.

A single EFD can replace many short-stroked drives by its ability to provide a very high transaction rate (IOPS). This reduces the total number of drives needed for the application, increases power saving by not having to keep many spinning disks, and may reduce floor space in the data center as well.

EFDs provide very low latency, so applications where predictable low response time is critical and not all the data can be kept at the host or storage cache may benefit from using such drives. Because of the absence of rotating media in EFDs, their transfer rate is extremely high and data can be served much faster than the best response time that can be achieved even with a large number of short-stroked hard drives.

Enterprise Flash Drives or Solid State Drives

Enterprise flash drives are designed to dramatically increase the performance of latency sensitive applications. Enterprise flash drives, also known as solid state drives (SSD), contain no moving parts and appear as standard drives to existing storage management tools, allowing administrators to manage Tier 0 without special processes or custom tools or extra training. Tier 0 EFDs are ideally suited for applications with high transaction rates and those requiring the fastest possible retrieval and storage of data, such as currency exchange and electronic trading systems, or real-time data acquisition and processing. They also can prove to be extremely good for highly read-intensive workloads like search engine databases.

The EFDs are designed to deliver millisecond application response times and up to 30 times more I/O operations per second (IOPS) than traditional Fibre Channel hard disk drives. Additionally, EFDs consume significantly less energy per IOPS than traditional hard disk drives, providing the opportunity for significantly increased TCO by reducing the data center energy and space footprints. Database performance has long been constrained by the I/O capability of hard disk drives (HDD), and the performance of the HDD has been limited by intrinsic mechanical delays of head seek and rotational latency. EFDs, however, have no moving parts and therefore no seek or rotational latency delays, which dramatically improves their ability to sustain very high number of IOPS with very low overall response times.

Over the past 25 years, the rotational speeds of HDDs have improved from 3,600 rpm to 15,000 rpm, yielding only four times the improvement in IOPS when the rest of the computer technologies like CPU speeds saw double digit growth. EFD technology represents a significant leap in performance and may sustain up to 30 times the IOPS of traditional HDD technology. Proper use of EFDs can deliver vastly increased performance to the database application when compared to traditional Fibre Channel drives, both in transaction rates per minute as well as transaction response time.

Sunday, October 25, 2009

Tuning SQL Queries

About 80 percent of database query performance problems can be solved by adjusting the SQL statement. However, you must understand how the particular DBMS being used processes SQL statements in order to know what to tweak.

The query optimizer is the software component in the RDBMS that analyzes an SQL statement to determine the best way to execute it. Most modern optimizers are cost-based, which means that they estimate the cost of all possible ways to execute a statement and then chose the one with the lowest cost.

Here are some considerations regarding query optimizers:

    * Order of table names: Does the order of the table names in the FROM or JOIN clause have any influence on the order in which tables are accessed when performing the joins? This is more likely the case with a rule-based optimizer. Ideally, the DBMS should access the most selective table (the one that will eliminate the most number of rows from the result set) first.

    * Order of search predicates Does the order of the predicates in the WHERE clause have any influence on the order in which the predicates are evaluated? Ideally, the most restrictive predicate (the one that eliminates the most number of rows) should be evaluated first.

    * Lack of statistics If a cost-based optimizer is being used, what does it do when statistics have not been collected for one or more tables? Some optimizers, such as Oracle's, revert back to rule-based, while others assume default values for the required statistics or simply refuse to use any indexes and do full table scans of all the tables. A full table scan is where the DBMS reads every row in the table to find the desired ones, which of course can be a performance disaster for tables with very large numbers of rows.

    * Query rewrites Are queries rewritten into more efficient forms by the optimizer? For example, many optimizers automatically rewrite sub selects into equivalent joins in order to simplify subsequent processing. In some cases, you may find that certain DBMS options must be enabled in order to allow the optimizer to rewrite queries.
    * View definition merges For queries that use views; at what point does the DBMS merge the view definition (the query that defines the view) into the SQL statement submitted by the database user? This has obvious implications for the optimizer -the sooner it can evaluate the entire SQL statement, the smarter its decision should be.
    * Other criteria What other criteria influence the optimizer? For example, some optimizers will favor unique indexes over non unique ones, and some will favor the use of an index to sequence rows over sorting the result set.

Here are some considerations regarding query design:

    * Know your data.  
When writing the SQL statement, you should have some idea of how many rows are in each table, how selective your WHERE predicates are, and how many rows you expect in the result set. The larger the number of rows involved, the more time you should spend thinking about the best way to write the SQL statement.
    * Minimize returned rows.  The fewer the rows in the result set, the more efficiently the query will run.
    * Avoid scans of large tables.  For tables over 1000 rows or so, scanning all the rows in the table instead of using an index can be expensive in terms of resources required. And, of course, the larger the table, the more expensive a table scans becomes. Full table scans occur in the following situations:
    * The query does not contain a WHERE clause to limit rows.
    * None of the columns referenced in the WHERE clause matches the leading column of an index on the table.
    * Index and table statistics have not been updated. Most RDBMS query optimizers use statistics to evaluate available indexes, and without statistics, a table scan may be seen as more efficient than using an index.
    * At least one column in the WHERE clause does match the first column of an available index, but the comparison used obviates the use of an index. These cases include the following:

          o Use of the NOT operator (for example, WHERE NOT CITY = 'New York'). In general, indexes can be used to find what is in a table, but cannot be used to find what is not in a table.
          o Use of the NOT EQUAL operator (for example, WHERE CITY <> 'New York').
          o Use of a wildcard in the first position of a comparison string (for example, WHERE CITY LIKE '%York%').
          o Use of an SQL function in the comparison (for example, WHERE UPPER(CITY) = 'NEW YORK').

    * Avoid unnecessary columns.  The wider the data in each row in the result set, the more disk space and memory that is required for intermediate operations such as sorts and to hold the result set.
    * Avoid unnecessary tables.  The fewer the tables, the more efficient the query.
    * Avoid sorts of large result sets.  Sorts are expensive, especially when the rows being sorted will not fit in memory. When the result set is expected to be very large, sorts should be avoided. Most optimizers will use an index if it can eliminate the need for a sort, but creating an index solely to avoid a sort of a large number of rows is probably not wise because of the overhead required to maintain the index.
    * Match data types in predicates.  Whether a predicate compares two column values as is done with joins, or a column value and a literal as is done when filtering rows, it is important for the data types to match. When the data types do not match, the DBMS must convert one of them before performing the comparison, and while the work to do this is relatively small, it mounts quickly when it has to be done for each row in a large table.
    * Use IN instead of OR when possible.  The IN operator can be rewritten as a JOIN, but the OR operator often requires multiple queries to be run with the results combined by the DBMS. The former is far more efficient.
    * Use GROUP BY instead of DISTINCT.  In most DBMSs, a GROUP BY is a more efficient way to eliminate duplicate rows compared with the DISTINCT keyword. The reason for this is that a GROUP BY invokes the sort required to find the duplicates earlier in the processing of the query, while a DISTINCT applies the sort as the very last step (applied to the final result set). The sooner the duplicate rows are eliminated, the more efficiently the remainder of the processing on that result set can be performed.
    * Use hints if you must.  Hints are special syntax that can be placed in the SQL statement to direct the optimizer to take certain actions, such as forcing the use of a particular index or a particular method to join tables. While this can be a very attractive option, it should only be used as a last resort because hints are not portable across database vendors, and they sometimes stop working when the DBMS software is upgraded to a newer version. The Oracle, MySQL, and Microsoft SQL Server optimizers all respond to hints, but the syntax accepted by each is different.
    * Temporary tables may help.  Temporary tables can help in some situations, such as assembling large result sets and then adding an index or two to support multiple subsequent queries against the temporary table. However, remember that you're doubling up the reads and writes when you do this because all the data selected from the original (base) tables must be written to the temporary table(s) and then read back from there. In short, there are no free lunches.
    * Views may help.  Views can help because they hide complex operations such as nested aggregate functions. And with DBMSs that don't have an SQL statement cache, views may process more efficiently than ordinary queries because the SQL statement that defines the view has already been parsed and optimized, which means this work does not have to be done every time the view is accessed. But above all, remember that views are also SQL queries, so they are subject to all the tuning considerations you apply to any SQL statement.

Postgres monitoring 8.4

 I like the monitoring enhancement of postgres8.4  The following two are very useful if you are debugging the performance issue.

Pg_stat_statements can provide you all the queries and response time. 
  • pg_stat_statements (contrib module)

    • Allows real-time monitoring of summary query statistics, letting you see at a glance which of your normalized queries is executing the most often and using the most system time. pg_stat_statement will speed up the process of "bad query" troubleshooting by an order of magnitude. 
    •  
      Auto Explain is good if you are debugging application performance.  Just enable for few hours and get SQL performance and turn it off.


    • auto_explain (contrib module)

      • Lets you automatically log select EXPLAIN plans to the PostgreSQL log for later analysis. Will help a great deal with troubleshooting slow stored procedures, as well as queries which perform differently between production and testing. Also allows logging of EXPLAIN plans for nested statements, that is, statements executed from within a function.


    Sunday, October 4, 2009

    MySQL vs Postgres

    We have two good matured open source databases. One is MYSQL and other is POSTGRES.

    Both systems have much to offer in terms of stability, flexibility, and performance. MySQL has features that PostgreSQL lacks, and vice versa. However, my primary focus is to help you determine which of the two databases to use in your own development.

    For example, some of the features I use are foreign key references, triggers, and views. They allow me to hide the complexity of the database from the application, thus avoiding the creation of complicated SQL commands. I know many developers who prefer the rich functionality of PostgreSQL’s SQL commands. One of the most notable differences between MySQL and PostgreSQL is the fact that you can’t do nested subqueries of subselects in MySQL. PostgreSQL follows many of the SQL ANSI standards, thus allowing the creation of complex SQL commands.

                                             POSTGRESQL                        MYSQL
    ANSI SQL compliance     Closer to ANSI SQL         Follows some of the ANSI
    Performance                                   Slower                 Faster
    Sub-selects                                      Yes                    No
    Transactions                                    Yes                     Yes, however InnoDB table type must be used
    Database replication                        Yes                     Yes
    Foreign key support                        Yes                      No
    Views                                             Yes                      No
    Stored procedures                          Yes                      No
    Triggers                                          Yes                      No
    Unions                                            Yes                      No
    Full joins                                         Yes                      No
    Constraints                                     Yes                       No
    Windows support                           Yes                       Yes
    Vacuum (cleanup)                          Yes                        No
    ODBC                                          Yes                        Yes
    JDBC                                           Yes                         Yes
    Different table types                      No                          Yes

    Let me suggest some reasons for using PostgreSQL over MySQL:

    * Complex database design
    * Moving away from Oracle, Sybase, or MSSQL
    * Complex rule sets (i.e., business rules)
    * Use of procedural languages on the server
    * Transactions
    * Use of stored procedures
    * Use of geographical data
    * R-Trees (i.e., used on indexes)

    Let me suggest some reasons for using MySQL over PostgreSQL:

    * MySQL is relatively faster than PostgreSQL.
    * Database design will be simpler.
    * You can create a basic Web-driven Web site.
    * MySQL’s replication has been thoroughly tested.
    * There’s no need for cleanups in MySQL (Vacuum).

    I think now you can make your decision easier. If you are having complex system and need good features of database obviously POSTGRESQL is good choice and if your system is simple and needs fast response time first choice is MYSQL.